Nathan Sheffield

@pinin4fjords I'll post some more thoughts on this soon. A question, though -- how are you parallelizing the jobs? Are you using looper or some other way to parallelize them?...

@pinin4fjords Ok, this is great! Please take a look and comment on #254. I mention there a few potential issues with building at scale like this. One issue is the...

Are those 2 sections in the config at the same time, meaning 2 different genome hashes have the same alias? If you're using a cdna fasta file, are you putting...

@stolarczyk is the config file unlocked between when the genome is added and when the alias is added?

@pinin4fjords one thing you could do that could help us track this down is using `refgenie --verbosity 5 build ...` which will add lots of debug output

That's interesting. I thought that refgenie couldn't accept multiple fasta assets under 1 genome, since the fasta asset it strictly tied to the hashed genome identifier (1-to-1). It looks like...

yep, I remember now. -- great I like that. Do you think we should change the `id` terminology then? It is a bit confusing, I think... Like, why is `id`...

Also may be a documentation issue. "Get aliases" does not seem to be to indicate that it will return a digest. I was expecting that to return a list of...

I see. that does make sense. But do you see how that was a bit roundabout way to get there from the perspective of someone just trying to lookup a...

is it confusing at all that one command, `id` would yield two different types of responses depending on its argument? the genome identifier is a DRUID, whereas the asset identifier...