Nathan Sheffield
Nathan Sheffield
@joseverdezoto can you look at this?
Thanks for pointing this out -- you are right. I think they were in there at one point, but they somehow are not anymore... I guess I didn't notice because...
I am looking into it now.
Hi @holgerbrandl, I've looked into it; there are 9 billion regions in that file. I'm not sure LOLA will be able to do that in its entirety. Do you have...
They should be the same. What kind of differences are you seeing?
Have you run this on the most recent version of lolaweb? can you try re-running it to see what happens? can you send me the link to the results on...
the d value is very different in your analyses which tells me the universe may be different. what reference genome assembly are you using? and what universe are you using?
that is strange if you're using the same universe in both places. I will have to see if I can reproduce this. thanks for the files I'll take a look.
Interesting. I have never tried to do an analysis like this. There is no simple way to do it, your method seems to be the best to me at the...
Ok, seems possible. I'll keep this on the back burner and next time I work on LOLA I'll take a look at it.