Nathan Sheffield

Ok, I don't think it's loading twice, I just think there are two error message for some reason -- also, one is not running through logmuse. ``` looper --verbosity 5...

Also, it should specify *which* config (that's a peppy thing)

after some discussion in infrastructure, we think it might make sense to: - bring pephubclient into peppy as a submodule - bring eido back into peppy as a submodule -...

probably a relic of the time before this was a variable option

I think we should prioritize this; it will make it easier to adopt PEP for current use cases that lack a yaml.

Just to add to this, I'd like to be able to do this: ``` eido convert https://raw.githubusercontent.com/nf-core/test-datasets/rnaseq/samplesheet/v3.1/samplesheet_test.csv -f yaml-samples ```

indeed, that does work. that makes sense. thanks!

Interesting. The error is *actually* that I mis-specified the `sample_table` attribute as `sample_annotation`. So, the problem is actually that it's not warning me of a missing sample_table, leading to my...

That is not related. It is a red herring

Thanks for raising this. I agree that's strange. @stolarczyk did you have a reason for adding the `/tests` folder to the MANIFEST.in? https://github.com/pepkit/peppy/blob/a8becea34be9d8947c43b445bc881855770679c5/MANIFEST.in#L5