Nathan Sheffield

or, even better, just use `packages=['peppy']`, since this will only ever hold a single package. Thanks for pointing that out.

I originally typed out this response, but now I'm rethinking: > The `sample_name` at one point was forced to be unique. If that has been lost, I think we should...

Thoughts @afrendeiro ?

I think we shouldn't go down to library/protocol, since that really depends on how pipelines are implemented... This reminds me of #169. For now let's just leave it as a...

New idea: if duplicate names are detected, move that column to `sample_name_orig`, and then generate a unique `sample_name` (based on the original one, maybe postpending `_dupe1`), and provide a warning.

ok thanks, I will change the docs to reflect this.

there's also something confusing int he docs for `to_yaml`: Serializes itself in YAML format. Parameters: path (str): A file path to write yaml to; provide this orthe subs_folder_path what is...

I want to do this in a jinja template, so it's not ideal to write to disk and then re-read it. I'm actually not sure it would work

ah, I see now. I misread it indeed. unfortunately I can't use `yaml.dump` in a jinja template, though

~~I like the match-warn-and-proceed idea.~~ ~~so, first it matches case sensitive. if it can't find one, it looks case-insensitive and proceeds, with a warning.~~ On second thought, I would probably...