niworkflows
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nipreps
Common workflows for MRI (anatomical, functional, diffusion, etc)
The ICA-AROMA reportlet can get very long for long duration BOLD runs, and is not very diagnostic of general fMRIPrep performance. Collapsing it by default, possibly with a
- [ ] Use the ordering of the right-hand plot (magnitude of correlation with GS) for the heatmap on the left. - [ ] Rotate the bar plot 90 deg....
Because ANTs resets x-forms, Padding/depadding (https://github.com/nipreps/niworkflows/pull/567#discussion_r490306151), Truncations, and perhaps one for all the binary math-morphology operations of the ATROPOS refinement of the brain-extraction.
Check out https://github.com/leeoniya/uPlot and their [example plot](https://leeoniya.github.io/uPlot/bench/uPlot.html) with 166k points. It's designed to use very little memory. This might be a good alternative to our existing fMRIPlot line plots, but...
I'd like to contribute a change to make fMRIPlot more generalize-able to other modalities. What I have in mind is removing the dependence on func_file being supplied. That way the...
Report capable version of the Nipype GIFT Interface. Should be very simple to implement and should be modeled after: https://github.com/poldracklab/niworkflows/blob/7e7a76ced74789932e71298634e2d14fe7c291c3/niworkflows/interfaces/segmentation.py#L103 https://github.com/poldracklab/niworkflows/blob/e486df097e2204e18f42aab1a0fef4d9f33d5608/niworkflows/viz/utils.py#L482 function should be refactored to abstract away code that...
Watching `htop`, I don't think `Atropos` is ever spawning extra processes the way `antsRegistration` does, and its CPU usage never tops 100%. Does someone else have any evidence to justify...
We should make the repr show something of the values. See, e.g.: https://sentry.io/organizations/poldracklab/issues/1575521394/tags/output_spaces/
taking improvements from: - https://github.com/nipreps/nirodents/blob/master/nirodents/workflows/brainextraction.py - https://github.com/nipreps/nibabies/blob/master/nibabies/workflows/brain_extraction.py
This is an issue to continue with the conversation initiated here: https://github.com/nipreps/niworkflows/pull/512#discussion_r421096656