niworkflows

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`imagecodecs` is now required by `scikit-image`, which has extremely finicky installation requirements, so our old minimum requirements for `pip` and `setuptools` are no longer usable. This is mostly because we...

effigies

It is becoming more apparent that a more generalizable code for summary interfaces is necessary. Additionally, in the context of multi-site studies, we should have more flexibility to add more...

oesteban

Crop coregistration reports if a mask or a contour is available

1

This will hopefully trim down the size of the reports. Should be easy with this function: http://nilearn.github.io/modules/generated/nilearn.image.crop_img.html

chrisgorgo

Fill-in AFNI skull-stripping mask

2

See poldracklab/mriqc#552, poldracklab/mriqc#554, poldracklab/fmriprep#659.

effigies

Automatically generate a "Data" (image acquisition) boilerplate

11

This can be easily done just mapping the JSON sidecar files to text. (Suggested by Sam Nastase in his open review to the preprint)

oesteban

I believe here's where you sample the subcortical structures from the BOLD data. Now that we have learned so much from nitransforms, you can do this step without the resampling...

mgxd

Propagate TR from BIDS structure to NIfTI dims

3

Transfer from poldracklab/fmriprep#1093.

oesteban

Write a yaml report schema that generates group reports, e.g. by selecting the corresponding "reportlets" and appending them together for all the spatial normalizations across subjects. (an original idea of...

oesteban

Synchronous temporal filter workflow

4

I have a workflow that applies the same temporal filtering procedure to both 4D NIfTI time series and 2D TSV time series (e.g., confounds). This is necessary to avoid [frequency...

rciric

Improve look and feel of fMRIPlot

2

- [ ] Allow setting figsize - [ ] Revise labels positioning and fonts sizes

oesteban