niworkflows

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JS based scrolling through volumes

3

Courtesy of @akeshavan http://anisha.pizza/preAFQ/#/report?url=https%3A%2F%2Fs3-us-west-2.amazonaws.com%2Fakeshavan-mindcontrol%2Ftests%2FHBN%2FSite-SI%2Fsub-NDARRU600XWW%2Fsess-01%2Fderivatives%2FpreAFQ%2Fpreafq%2Freport%2Freport.json  

chrisgorgo

Replace inhouse plotting with VisualQC

1

VisualQC implements, segmentation, coregistration, and timeseries (including carpet) plots. See https://raamana.github.io/visualqc/readme.html for more details Benefits: - If VisualQC becomes a collaborative project reused by multiple packages it will be a...

chrisgorgo

Animations are CPU intensive

2

Noticeable if you are reviewing dozens of reports on a long haul flight. Background reading: https://developers.google.com/web/fundamentals/design-and-ux/animations/animations-and-performance https://developer.mozilla.org/en-US/Apps/Fundamentals/Performance/CSS_JavaScript_animation_performance

chrisgorgo

Add additional coregistration step for subcortical regions

4

Using this mask:  https://dl.dropboxusercontent.com/u/18255196/secondstepmask.nii.gz Inspired from the approach in LeadDB: ``` /Users/andreashorn/Downloads/antsdata_Nick/antsRegistration_mod.maci64 --verbose 1 --dimensionality 3 --float 1 \ --output [glanat,glanat.nii] --interpolation Linear --use-histogram-matching 1 \ --write-composite-transform 1 \...

chrisgorgo

Consider replacing WEBP compression with guetzli

6

This would allow for firefox and safari compatibility https://github.com/google/guetzli

chrisgorgo

Bring hard-links of gzipped files back

1

In #295 we discontinued hard-linking gzipped files to address poldracklab/fmriprep#1480. The request here would be to bring those back whenever possible (see https://github.com/poldracklab/niworkflows/pull/295#issuecomment-459441516).

oesteban