test-datasets

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Added HISAT2 test files

2

Added test Input and output data for the HISAT2 module.

FelixKrueger

added test data for shovill module

annacprice

Jeremy1805

error in gff file (rnaseq branch test-datasets/reference/genes.gff)

2

We found a problem in the gff file you have as test. * rnaseq * test-datasets/reference/genes.gff ``` I ensembl transcript 335 649 . + . ID=YAL069W;Parent=YAL069W;geneID=YAL069W;gene_biotype=protein_coding;gene_name=YAL069W;gene_source=ensembl;gene_version=1;p_id=P3634;transcript_biotype=protein_coding;transcript_source=ensembl;transcript_version=1;tss_id=TSS1129 I ensembl exon 335...

Juke34

rnaseq: tar.gz indices for STAR, HiSAT2, Salmon with chromI

2

Not show what's the right way to do this, but this is kinda combining both the smaller data in https://github.com/nf-core/test-datasets/pull/72 and the gzipped references in https://github.com/nf-core/test-datasets/pull/70

olgabot

@ggabernet I've just moved the test file as you suggested.

rolivella

Openms idxml

7

This is for uploading data to test OpenMS idXML module

rolivella

Hey, I need a dataset to run orthology software (orthofinder primarily). It could be for example, ~10 species with ~50 genes of a particular gene family (say 10 mammal species...

chriswyatt1

Added test data for comradesnf

1

JLP-BioInf

Add new file for HaploCart and update README

1

Test input file for HaploCart. The input file is simulated single-end FASTQ from the rCRS reference genome.

JoshuaDanielRubin