test-datasets
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nf-core
Test data to be used for automated testing with the nf-core pipelines
adding testdataset for reference based approach and prior to radseq release
Making an argument for tracking to move everything to git-lfs so that downloading the repos locally isn't multiple GBs, and it might clean up the history a bit. But that's...
- [ ] Sync the test data repo to an s3 bucket - [ ] Sync the repo to a bucket on a push to the repo - [ ]...
Rebuild the compressed db from the command line according to the Readme instructions given.
[ERR188383.tar.gz](https://github.com/nf-core/test-datasets/files/11310269/ERR188383.tar.gz) [ERR188428.tar.gz](https://github.com/nf-core/test-datasets/files/11310270/ERR188428.tar.gz) [ERR188454.tar.gz](https://github.com/nf-core/test-datasets/files/11310271/ERR188454.tar.gz) [ERR204916.tar.gz](https://github.com/nf-core/test-datasets/files/11310272/ERR204916.tar.gz) [samplesheet_salmon.csv](https://github.com/nf-core/test-datasets/files/11310281/samplesheet_salmon.csv)
- [x] Check [here](https://github.com/nf-core/test-datasets/branches/all) that there isn't already a branch containing data that could be used - [x] Fork the [nf-core/test-datasets repository](https://github.com/nf-core/test-datasets) to your GitHub account - [x] Create a...
UMI FASTQ file ~composed of random 9bp synthetic oligos, all with uniform quality.~ Generated by stripping the UMI sequence from the existing FASTQ and turning it into a separate file....
This PR adds a mini-GTF for use alongside the rna-seq test data.
