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Update LAST to latest version and refresh test YAML files.
This is an update of all last/* modules to a more recent version of LAST.
Some test.yml files got a lot of entries removed; the reason is that they were part of the output of the untar module and therefore should not have been there anyway.
PR checklist
- [x] This comment contains a description of changes (with reason).
- [ ] If you've fixed a bug or added code that should be tested, add tests!
- [ ] If you've added a new tool - have you followed the module conventions in the contribution docs
- [ ] If necessary, include test data in your PR.
- [ ] Remove all TODO statements.
- [x] Emit the
versions.ymlfile. - [ ] Follow the naming conventions.
- [ ] Follow the parameters requirements.
- [ ] Follow the input/output options guidelines.
- [ ] Add a resource
label - [ ] Use BioConda and BioContainers if possible to fulfil software requirements.
- Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
- [ ]
PROFILE=docker pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware - [x]
PROFILE=singularity pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware - [ ]
PROFILE=conda pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware
- [ ]