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nf-core
Repository to host tool-specific module files for the Nextflow DSL2 community!
Add spkeeplongestisoform module for AGAT as asked in #7892 ## PR checklist Closes #XXX - [x] This comment contains a description of changes (with reason). - [x] If you've fixed...
## PR checklist Closes #5409 Used the following command line to update all the main.nf : `sed -i -r -e '/touch.*.gz/s/touch/echo "" | gzip >/' modules/nf-core/*/main.nf`
## PR checklist Updates Abacas test to follow https://nf-co.re/docs/guidelines/components/modules#configuration-of-extargs-in-tests - [x] This comment contains a description of changes (with reason). - [ ] If you've fixed a bug or added...
### Have you checked the docs? - [x] [nf-core website: troubleshooting](https://nf-co.re/usage/troubleshooting) - [x] [nf-core modules documentation](https://nf-co.re/docs/contributing/modules) ### Description of the bug gatk4/mutect2 failed the nf-test using docker/conda and singularity, raising...
### Have you checked the docs? - [x] [nf-core website: troubleshooting](https://nf-co.re/usage/troubleshooting) - [x] [nf-core modules documentation](https://nf-co.re/docs/contributing/modules) ### Description of the bug Phakorra failed the nf-test using conda, raising a fail...
### Have you checked the docs? - [x] [nf-core website: troubleshooting](https://nf-co.re/usage/troubleshooting) - [x] [nf-core modules documentation](https://nf-co.re/docs/contributing/modules) ### Description of the bug strelka/somatic failed the nf-test using conda, raising a fail...
Adding the possibility to feed in a sites file ## PR checklist - [x] This comment contains a description of changes (with reason). - [x] If you've fixed a bug...
### Is there an existing module for this? - [x] I have searched for the existing module ### Is there an open PR for this? - [x] I have searched...
## PR checklist Unifies the windowmasker config to follow module guidelines: https://nf-co.re/docs/guidelines/components/modules#configuration-of-extargs-in-tests - [x] This comment contains a description of changes (with reason). - [ ] If you've fixed a...