nf-core
nf-test failing for gatk4/mutect2
Have you checked the docs?
Description of the bug
gatk4/mutect2 failed the nf-test using docker/conda and singularity, raising a fail check for https://github.com/nf-core/modules/pull/7978
Below is the error message.
`Test Process GATK4_MUTECT2
Test [79f75f93] 'tumor_normal_pair_f1r2_stubs'
> Nextflow 24.10.5 is available - Please consider updating your version to it
> N E X T F L O W ~ version 24.10.2
> Launching /home/runner/_work/modules/modules/.nf-test-79f75f932e3f482c341b212cf6727a5.nf [drunk_curran] DSL2 - revision: 7cd226c0d7
> Creating env using conda: /home/runner/_work/modules/modules/modules/nf-core/gatk4/mutect2/tests/../environment.yml [cache /home/runner/_work/modules/modules/.nf-test/tests/79f75f932e3f482c341b212cf6727a5/work/conda/env-3a8b868ccffc5b6e-5c48d2b4fea4e1249b0470c58ff2a1bc]
> [7e/a970a4] Submitted process > GATK4_MUTECT2 (test)
java.lang.RuntimeException: Different Snapshot:
[ [
[ [
"test.vcf.gz" "test.vcf.gz"
], ],
[ [
"test.vcf.gz.tbi" "test.vcf.gz.tbi"
], ],
[ [
"test.vcf.gz.stats" "test.vcf.gz.stats"
], ],
[ [
"test.f1r2.tar.gz" "test.f1r2.tar.gz"
], ],
[ [
FAILED (93.47s)`
Command used and terminal output
Relevant files
No response
System information
No response
