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### Is there an existing module for this? - [X] I have searched for the existing module ### Is there an open PR for this? - [X] I have searched...

kbestak

lborcard

maxulysse

Added delly/filter, changed delly/call - this time with up-to-date fork

10

## PR checklist Closes https://github.com/nf-core/modules/issues/4808 - [X] This comment contains a description of changes (with reason). - Added module delly/filter - Changed module delly/call to allow somatic SV calling -...

alexnater

## PR checklist Closes #5178 - [x] Added new module LJA. - [x] LJA works (tested Singularity and Docker) with container [`troder/lja`](https://hub.docker.com/repository/docker/troder/lja) - [x] Test works with in-house PacBio HiFi...

MrTomRod

## PR checklist This PR addresses the issue #4999 and closes PRs #4659 and #4533 - [x] This comment contains a description of changes (with reason). - [x] If you've...

Darcy220606

## PR checklist As explained in https://github.com/ncbi/sra-tools/issues/896, `vdb-validate` does not detect file corruption if the prefetched files do not contain MD5 checksums. It has happened to me many times that...

suhrig

## PR checklist Closes #5145 - [x] If you've fixed a bug or added code that should be tested, add tests! - [x] If necessary, include test data in your...

DavideBag

## PR checklist - [x] This module is used to perform GWAS analysis using Plink. - [x] If you've fixed a bug or added code that should be tested, add...

LorenzoS96

## PR checklist Closes #5379 - [x] If you've fixed a bug or added code that should be tested, add tests! - [x] If you've added a new tool -...

DavideBag