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nf-core
Repository to host tool-specific module files for the Nextflow DSL2 community!
`fasta_windows` is a tool to quickly compute statistics over a fasta file in windows. https://github.com/tolkit/fasta_windows ## PR checklist - [ ] This comment contains a description of changes (with reason)....
## PR checklist Closes #1864 - [ ] This comment contains a description of changes (with reason). - [ ] If you've fixed a bug or added code that should...
## PR checklist This PR fixes the module bcftools/stats and enables to use a regions (with index tbi files) or targets file (no index tbi file required) and adjusts the...
I think it would be good to have a module for sentieon (https://bioconda.github.io/recipes/sentieon/README.html) bwa mem (mapping). - [x] This module does not exist yet with the [`nf-core modules list`](https://github.com/nf-core/tools#list-modules) command...
[Nextgenmap](https://github.com/Cibiv/NextGenMap) is genomic aligner from [CIBIV](http://www.cibiv.at/). It is useful for identifying SNPs. - [ x] This comment contains a description of changes (with reason). - [ x] If you've fixed...
## PR checklist Closes [#1747](https://github.com/nf-core/modules/issues/1747) - [x] This comment contains a description of changes (with reason). - [x] If you've fixed a bug or added code that should be tested,...
### Is there an existing module for this? - [X] I have searched for the existing module ### Is there an open PR for this? - [X] I have searched...
### Is there an existing module for this? - [X] I have searched for the existing module ### Is there an open PR for this? - [X] I have searched...
## PR checklist Closes #XXX - [ ] This comment contains a description of changes (with reason). - [ ] If you've fixed a bug or added code that should...
## PR checklist Closes nf-core/tools#1434 This workflow is intended to run nightly. It runs the linting of all modules with `--fix-version` option to check for available module version updates. If...