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Add module: goat/taxonsearch

Open alxndrdiaz opened this issue 2 years ago • 1 comments

PR checklist

Closes #1864

  • [ ] This comment contains a description of changes (with reason).
  • [ ] If you've fixed a bug or added code that should be tested, add tests!
  • [ ] If you've added a new tool - have you followed the module conventions in the contribution docs
  • [ ] If necessary, include test data in your PR.
  • [ ] Remove all TODO statements.
  • [ ] Emit the versions.yml file.
  • [ ] Follow the naming conventions.
  • [ ] Follow the parameters requirements.
  • [ ] Follow the input/output options guidelines.
  • [ ] Add a resource label
  • [ ] Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • [ ] PROFILE=docker pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware
    • [ ] PROFILE=singularity pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware
    • [ ] PROFILE=conda pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware

alxndrdiaz avatar Jul 12 '22 03:07 alxndrdiaz

As in #1833 , don't use NO_FILE in nf-core modules.

muffato avatar Jul 12 '22 09:07 muffato

This module is part of the Google Summer of Code 2022 project: Conversion of the BlobToolKit pipeline to Nextflow, GitHub repository: https://github.com/sanger-tol/blobtoolkit

alxndrdiaz avatar Sep 21 '22 12:09 alxndrdiaz