hlatyping
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nf-core
Precision HLA typing from next-generation sequencing data
### Description of the bug Just noticed that when the pipeline is run with data from multiple libraries/runs, the pipeline produces results for each library/line separately which is a bit...
### Description of the bug This test samplesheet seems to fail `check_samplesheet.py`. I removed the data and just provided the headers - see attached files below, but... ``` cat test.csv...
### Description of feature ### Algorithm/tool short description > estimate the most probable HLA alleles at full (8-digit) resolution from whole-genome sequence data. HLA-VBSeq simultaneously optimizes read alignments to HLA...
### Description of feature Hello, As described in #145, adding more typing tools could allow us (among other things) to set up a result combination algorithm. If you compare it...
### Description of feature Hello. Because all typing tools have their limitations & advantages (datatype, reads length, read depth, resolution, type of genes typable, etc.), it could be interesting to...
Only for required genome fasta / subset for HLA to make mapping much faster and less memory intensive.
Hi! I have a problem with running this pipeline. It seems that it incorrectly chooses memory requirements for files. This is especially problematic with very big files. My biggest file...
I've tried to use a custom reference file. I have a file in the fasta format. I used Yara tool (http://packages.seqan.de/yara) to repack the fasta file into a supported format....
Version `2.14.1` of [nf-core/tools](https://github.com/nf-core/tools) has just been released with updates to the nf-core template. This automated pull-request attempts to apply the relevant updates to this pipeline. Please make sure to...
