demultiplex
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nf-core
Demultiplexing pipeline for sequencing data
### Description of the bug First off, thank you for maintaining this pipeline, it looks very useful! While informally validating the pipeline on an old study, I believe I observed...
Some of the directory descriptions contain an angle bracket < which must be escaped in markdown. I have added the escape character. ## PR checklist - [X ] This comment...
This apply post-release fixes to `dev`. CI will probably fail until #174 is taken care of.
Version `2.13.1` of [nf-core/tools](https://github.com/nf-core/tools) has just been released with updates to the nf-core template. This automated pull-request attempts to apply the relevant updates to this pipeline. Please make sure to...
### Description of the bug After downloading the singularity images with `nf-core download demultiplex`, nextflow still attempts to download the bclconvert singularity image (similar problems occur with bcl2fastq and bases2fastq)....
### Description of the bug On a number of occasions we have had the situation that the demux pipeline encounters the case where a sample in the sample sheet doesn't...
### Description of the bug In the nf-core documentation for the sample sheet there is an error that sometimes a column is referred to as : flowcell and in other...
### Description of the bug Seems like the File methods in NfcoreTemplate.groovy don't like s3: locations. I had to change them to use Nextflow's file method. I think that nf-core...
## PR checklist - [x] This comment contains a description of changes (with reason). - [ ] If you've fixed a bug or added code that should be tested, add...
I guess this could wait until we bump the image version as well. Let's wait on https://github.com/nf-core/modules/pull/3558 and get it all in one PR.
