Issue with AWS and NfcoreTemplate.groovy

[rulixxx]

Description of the bug

Seems like the File methods in NfcoreTemplate.groovy don't like s3: locations. I had to change them to use Nextflow's file method. I think that nf-core would have fixed this already so probably just have to update this file to a more recent version to fix things.

Command used and terminal output

No response

Relevant files

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System information

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