crisprseq
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nf-core
A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted next generation sequencing (NGS) data (`targeted`) as well as the...
This PR aims to add a new feature : hit selection. The aim would be to run an algorithm on found gene essentials and determine a p-value cutoff based on...
The bug I am currently having is due to dashes in potential sample names. Anything with a "-" in the sample name is converted to a dot in matrix and...
## PR checklist - [ ] This comment contains a description of changes (with reason). - [ ] If you've fixed a bug or added code that should be tested,...
### Description of the bug The process NFCORE_CRISPRSEQ:CRISPRSEQ_SCREENING:MAGECK_FLUTEMLE starts the FluteMLE command using the data of the gene_summary.txt file. It downloads several pathway files until pathway 'hsa05213' were it stops...
### Description of feature The software is here https://github.com/hart-lab/drugz
### Description of the bug ### Problem description: I encountered an error while running the pipeline with the cutadapt option, specifically when passing adapter sequences using the `five_prime_adapter `and `three_prime_adapter...
### Description of the bug I’ve run this pipeline now with a few hundred samples - generally it seems to be working very well. However, I notice that one sample...
### Description of the bug A user seems to be having an issue with the matrice creation with the enclosed contrast file. Run matrice creation to see if it fails...
### Description of the bug Hi, I am not sure if this any compatibility issue but I couldn't run the pipeline with -r 2.1.1 which was suggested by one of...
