nextflow

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Fixed some typos in the `executor.retry.*` config docs, and some general language improvements to that section.

bentsherman

The following settings control the retry policy that Nextflow uses when calling the Azure Batch API: - Considerations re: how often a job status is checked (i.e Azure jobs being...

bentsherman

## New feature Hi, it would be nice to have a `decompress` and `compress` parameter for the `collectFile` operator like for the splitX operators. ## Usage scenario Collect compressed files...

jhahnfeld

Ignore conda directive when running with stubs

7

I would like the option to ignore any `conda` directive with `nextflow run -stub .`. I want rapid feedback on the plumbing and data flow of my pipelines, and don't...

nh13

Add docker builds on non-ARM architectures

5

## New feature Hi, Recent builds (22.x and higher) of the [official nextflow image](https://hub.docker.com/r/nextflow/nextflow/tags) are only built for the arm64 architecture. Would it be possible to additionally provide builds for...

mstone-modulus

Azure, WARN: Failed to cleanup work dir

6

Hi NextFlow devs/community, I'm running into an error when I try to clean my working directories (running on Microsoft Azure). Specifically, in my `nextflow.config`, I have (as the last line)...

des2037

resume: cached results sometimes are processed again

9

## Bug report Re-rerunning pipeline several times with option -resume causing that some tasks are processed again. For example the pipeline is finished, then I change something in the LAST...

thedam

Fix `process.ext` set with `withName` overrides all processes

5

We maintain in `profileStack` a list of sections visited but we were checking if the property requested was only into the scope of the current stack instead to check if...

jorgeaguileraseqera

feature: add support for label/tags

6

Allow a new syntax in the `label` directive in key-value format ``` label k: 'value' label b: "${params.user}" ``` when this syntax is used we store them in a new...

jorgeaguileraseqera

input staging of files/path symlink issue

1

Hi! I'm having issues with Nextflow staging symlinks. Is there a way to remove disallow Nextflow to follow the input symlinks and treat them as files? In the institute we...

fgualdr