fusioncatcher
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ndaniel
Finder of Somatic Fusion Genes in RNA-seq data
Hi, fusioncatcher fails when it is run in Tower eg: Traceback (most recent call last): File "/opt/fusioncatcher/v1.33/bin/remove-adapter.py", line 1272, in main() File "/opt/fusioncatcher/v1.33/bin/remove-adapter.py", line 1268, in main options.processes) File "/opt/fusioncatcher/v1.33/bin/remove-adapter.py",...
Hi Daniel, All is in the title. I was wondering whether you have plans to make sometimes soon a new release with more recent annotations ? thank you, Best, Anthony
Hi, Is there a plan to change FusionCatcher from being based on Python 2.7 to being based on Python 3.0? I'm asking because I heard that Python 2.7 has reached...
I recently found that Bowtie2 and STAR seem to cat different files in this place? Is this intentional or a bug? This `gene-gene-star_final.psl` not used as it in Bowtie2 workflow...
Hi, I am particulary interested in the protein sequence generated by fusioncatcher. I have been unable to match the fusion sequence to the predicted fused transcript or the predicted fused...
Hi, I am writing to you today to ask a question about FusionCatcher. If FusionCatcher is installed in a conda environment, is the build data for the run directory human_v102?...
Hello, I installed fusioncatcher and its dependencies using bootstrap.py, but when I ran test.sh after the installation, I got this error: `ERROR: Wrong version of SeqTK found ()! Found 'sh:...
I was wondering if there is a command for FusionCatcher to detect fusion within the same gene.
Hello, I am running into the following error when trying to install fusioncatcher into a conda environment. I am using conda version 22.9.0. The error is repeatable on different machines....
Hi ndaniel, We are working on a research project on fusion genes. After comparing the results of several fusion-finding programs, Fusioncatcher turned out to be the most sensitive. However, we...
