fusioncatcher
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Change --link hard to --link soft to be run in Tower
Hi, fusioncatcher fails when it is run in Tower eg:
Traceback (most recent call last):
File "/opt/fusioncatcher/v1.33/bin/remove-adapter.py", line 1272, in
Could be possible to change the
remove-adapter.py
1146 --processes 12
1147 --input_1 //work/scratch/5HyTfJeqqZ8kAX/27/012aeab7afbbef5f1d4c0ca79e4b36/init-f-0_blox-0_1.fq
1148 --input_2 /work/scratch/5HyTfJeqqZ8kAX/27/012aeab7afbbef5f1d4c0ca79e4b36/init-r-1_blox-0_2.fq
1149 --output_1 /work/scratch/5HyTfJeqqZ8kAX/27/012aeab7afbbef5f1d4c0ca79e4b36/init-noadapt-0_blox-0_1.fq
1150 --output_2 /work/scratch/5HyTfJeqqZ8kAX/27/012aeab7afbbef5f1d4c0ca79e4b36/init-noadapt-1_blox-0_2.fq
1151 --trim-n 3
*1152 --link hard *
1153 > /work/scratch/5HyTfJeqqZ8kAX/27/012aeab7afbbef5f1d4c0ca79e4b36/log_adapters_0.txt \
for --link soft ?