Daniel Nicorici

So, finally I have had some time for looking into this but now the link above is broken. I am not sure if this can be fixed without it.

If you download the data manually using for example this script https://github.com/ndaniel/fusioncatcher/blob/master/data/download-human-db.sh does it work? It is not clear if this is an issue with the firewall blocking sourceforge.net or...

Hi jowkar, what version of FusionCatcher is there? Cheers, Daniel

I am trying to reproduce the bug and let's see. At first glance it looks like Ensembl has changed the organism name from canis_familiaris to canis_lupus_familiaris.

Yes, indeed I can reproduce the bug and it is related to the change from `canis_familiaris` to `canis_lupus_familiaris` in Ensembl. Several scripts need to be modified. Soon I will push...

@jowkar Indeed, that is correct! It looks like after these fixes there are still more things to fix.

Hi @asmitagpta as far as I understand you use an alpha release of FusionCatcher which looks like it has a bug where gene names are missing. This bug originates due...

Unfortunately it is not possible to split the 'list.txt' because SeqTK is run as part of a automatic pipeline (that is https://github.com/ndaniel/fusioncatcher ) on servers which run in parallel other...

> @ndaniel Sure - an error code would be good practice - but fusioncatcher will still fail? Usually SeqTK will become a zombie process and it will refuse in many...

> but given you know how much RAM you have, can you just fallback when you know the size of the list.txt file is too big? No. It is impossible...