Daniel Nicorici
Daniel Nicorici
This is basically a resurrected issue https://github.com/lh3/seqtk/pull/38 which was brought up to date to the latest release of seqtk such that they do not interfere with the original command line...
It looks like when there is not enough free memory available for "seqtk subseq", then a crash happens with this error message: "Segmentation fault (core dumped)". For example running this:...
When running this: ``` > library(biomartr) > biomartr::meta.retrieval(kingdom = "EnsemblBacteria", db = "ensemblgenomes", type = "genome") ``` the following error shows up: ``` Starting retrieval of information for all species...
Using splitlines instead of [:-1] for removing \n at the end of the lines. Using range(0,n,4) instead of looping for each line. This is strictly only a FASTQ reader.
As it is now it is not feasible to run `mash screen` with 100K mixtures because one needs to launch mash 100K times. `mash dist` has support for multi-fasta files...
Hello, would be possible to have a filter for the output that filters out from the output the lines that have the distance below a given threshold (for `mash dist`)?...
Hello, when using Pizzly 0.37.3 (SeqAn 2.2.0) and Kallisto 0.43.1 with Ensembl 81 and one gets this error message from Pizzly: ``` Error, could not find any transcript sequences check...
Making the test FASTQ file more compliant with aligners by changing slightly the reads ids such that paired reads have the same read id. This is done by removing the...
What would be the command line parameters for `parasail_aligner` for doing local pairwise alignment (without gaps within the sequences) of two DNA sequences For example, `1.fa` is like this ```...
It looks like FASTP is not able to detect *automatically* the adapter at all for miRNA-seq data. For example, FASTP is not able to detect *automatically* the adapter in the...