Ming Wang
Ming Wang
It is because of no MS2 spectrum
Rerunning query without MS2 requirement, - [link](https://proteomics2.ucsd.edu/ProteoSAFe/status.jsp?task=59302345270d45beae2280fcdf3ed803)
Might need to provide a keyword for ANY for masses
We will need to make more comprehensive testing for this
Likely won't merge
Instead of this, we're going to go with MS2PROD=(100 OR 104) AND MS2PROD=(200 OR 204)
Rudimentarly Database search ``` QUERY scaninfo(MS2DATA) WHERE MS2PROD=peptide(KK, charge=1, ion=y):INTENSITYPERCENT=5 AND MS2PROD=peptide(KKV, charge=1, ion=y):INTENSITYPERCENT=5 MS2PROD=peptide(KKVA, charge=1, ion=y):INTENSITYPERCENT=5 ``` ``` mzspec:MSV000079514:Adult_CD4Tcells_bRP_Elite_28_f01 ```
Do you all have any example queries and data you'd want to use as an example? If so then it should be reasonable to add support. I just don't have...
I think instead of implying that noise is bad, its better to simply put cutoff for whatever reason. WHERE INTENSITY>1000 WHERE INTENSITYPERCENT>1 WHERE TOPNPEAKS=100
One failure case is 1. File has only MS2 spectra 2. File has only MS1 spectra You do a query that is an OR QUERY scaninfo(MS1DATA) ||| QUERY scaninfo(MS2DATA) This...