Lars Kasper

Dear Jothini, Thank you so much for the detailed description of your question and for trying out the PhysIO Toolbox. Let me try to anwer your questions inline below >...

Dear Luca, I tried to run your example and also ran into some issues. Let's unpack this: 1. In general, the matlabbatch you pasted above looks correct and should reflect...

Dear Angela, Thank you for providing such a detailed description of the issue and your setup. And happy to hear PhysIO is useful in your research! Indeed, I believe that...

Dear Kristin, Thank you for trying out PhysIO. I have some questions for clarification before I can answer yours: 1. Do you know whether the original physiological logfile data was...

Dear Kristin, Thank you, that is very helpful. 1. The CMRR multiband sequence has the modern `Siemens_Tics` format, which is usually easier to synchronize than the `ideaCmdTool` version. Great! 2....

Dear Emily, Thank you for trying out the PhysIO Toolbox! This looks like the standard Siemens VB / IdeaCmdTool log format, and you could start from that example to adapt...

Dear Emily, The format you have is not `Siemens_Tics`, but `Siemens`. You will have to change this in the `physio.log_files.vendor` field. Have a look at the example data for PhysIO:...

Dear Emily, You can just put `physio.scan_timing.sync.method = 'nominal'` to see whether it runs through at all. If you don't have a DICOM file, maybe you got a `.json` sidecar...

Dear Emily, 1. You don't have to parse out the `relative_start_acquisition` (just leave it at 0), if you provide a `scan_timing_log` file, e.g., the `.json` sidecar and the `AcquisitionTime` variable...

Dear Emily, 1. `scan_timing.sync.method = 'nominal'` should work without specifying a `log_files.scan_timing_log` file. Can you try to leave the file empty, i.e., `physio.log_files.scan_timing = '';` 2. Are you able to...