Mike Lin

Correct me if wrong, but it is not forbidden for a VCF sample name to contain a comma. One possibility is to specify URI encoding of each element in the...

@daviesrob suggestion: percent-encoded tab delimiter

I think this is a reasonable idea in general. Just for reference, presently the spec says "Data blocks should not exceed ~1GB" (explicitly marked as provisional, though)

Wearing my opinionated hacker hat: I've personally been against htsget servers being responsible for filtering these individual fields because it leads to a need for complex scale-out backends in order...

@markjschreiber @wleepang ping

No strong preference from me, just the feature should work as documented =) (with tests?) A meta-suggestion might be for AGC to show some warning if the MANIFEST.json has apparently...

My opinion (acknowledging that reasonable people can disagree) is that stdout should not be slurped into logs because it may be gigantic in idiomatic cases -- the WDL spec contains...

cc @kankou-aliaksei as we've discussed this too

I've observed this too

Hi @khzhu, the WDL snippets look fine to me, so something more subtle must be going wrong. The only weird thing I see in the log is > `path: "***.denovo.vcf.gz"`...