Mike Lin
Mike Lin
In this example, ```python from typing import Optional class A: x: Optional[int] def __init__(self) -> None: self.x = 42 a = A() if a.x is not None: assert isinstance(a.x, int)...
Hi @lh3 @hasindu2008 My colleagues @morsecodist @katrinakalantar @rzlim08 @tfrcarvalho and I hacked on the existing split-index mode so that we can map against each index part in a separate process...
Compressing with `-n`/`--text` promotes alignment of BGZF blocks with the uncompressed text lines. BGZF blocks start at the beginning of an input line and end after some subsequent newline (except...
Per @tk2, EBI recently began switching all www connections, including to the CRAM Reference Registry, to HTTPS. This is good even though the references are public data, because it helps...
Based on my prior experience with C/C++ programs, it's possible to obtain a small but worthwhile throughput increase for intensive workloads (around 10%), by disabling `SQLITE_CONFIG_MEMSTATUS` and increasing the lookaside...
* prior discussion: #462 * implementation: https://github.com/chanzuckerberg/miniwdl/pull/507 and Cromwell does this already (? to confirm) This creates a loophole in the type system where `None` values are acceptable for an...
"call-subwf-0-xxx" if the scatter variable is stringifiable to xxx * if it's a File, take the basename * strip longest common prefix & suffix * truncate to some max length...
Experimental feature: if the task runtime section declares `autoEnv: true` then WDL declarations with atomic types are automatically propagated to environment variables in the task container. (atomic types: String, File,...
#493 Applies to `version development` only. The `squote()` function, in addition to prepending and appending single-quote marks, uses Python's [`shlex.quote()`](https://github.com/python/cpython/blob/6f37ebc61e9e0d13bcb1a2ddb7fc9723c04b6372/Lib/shlex.py#L323-L334) to furthermore escape any single-quote marks that may be embedded...
Provisionally implements https://github.com/openwdl/wdl/pull/315 * Add task `hints` section * Modeled on meta sections, with nested literals but no expressions * Unused for now * Allow JSON/CLI input overrides for runtime...