Mike Lin

Results 150 comments of Mike Lin

Yea, Docker Swarm continues to make sense as the default for local use because it's so easy to start up -- but we want to support Kubernetes scheduling too for...

Looks promising for test/dev: https://k0sproject.io

This is a stopgap solution which should unblock the requirement until there's something more built-in: https://gist.github.com/mlin/55bafb76c784164651687336cd15e162

Further to the previous example [upload_output_files.sh](https://github.com/chanzuckerberg/miniwdl/blob/master/examples/upload_output_files.sh) which shows how to upload all the output files on workflow completion, The new example plugin [s3_progressive_upload](https://github.com/chanzuckerberg/miniwdl/tree/master/examples/plugin_s3_progressive_upload) de-risks how to upload intermediate results as...

Thanks -- I suspect a temporary workaround is to use the Homebrew or miniconda3 versions of Python3 instead of the macOS built-in version. The latter has several odd things about...

@rhpvorderman Thank you for this! Our *initial* goals for the runner are to create something pretty simple for execution on the local host, but importantly (i) supports the OpenWDL community...

@illusional based on those tracebacks I suspect the installed docker-py package might need updating (`pip3 install --upgrade docker` or such). Can you see if that makes a difference? (More broadly,...

Dang, it seems that Travis' macOS environment [doesn't support Docker for Mac](https://github.com/travis-ci/travis-ci/issues/7773), so we're going to have to come up with some other approach for Mac testing.

@illusional thank you for the field report; much appreciated! @mckinsel @bkmartinjr @tjchen

I've been seeing flakiness with Docker for Mac's volume mounting. Sporadically (maybe less than 1% of container starts) the WDL input files appear to be empty (mount point exists, but...