Júlia Mir Pedrol

maintain anchors in pytest_modules.yml

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When adding subworkflows, we need to add anchors in `pytest_modules.yml` to link subworkflows with their modules. When loading the yml file with `pyyaml` anchors are removed. Here we change to...

Custom name

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Check that the workflow name provided with a template doesn't contain dashes. Closes #1806 Ask for `Name` instead of `Workflow name` when creating a pipeline with prompts. Closes #1805 ##...

Fix questionary when updating `modules.json` file and commit sha is not found

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Closes #1824 When `modules.json` was updated and a commit sha for the module was not found, a questionary asked if the module is installed in a different branch. According to...

Closes #1543 The validation of nextflow_schema.json files from nf-core pipelines is now part of a core Nextflow plugin: https://github.com/nextflow-io/nf-validation/pull/5 Functions can be imported to a pipeline with `include { paramsHelp,...

compare to last commit in a PR when using git commands

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Close #205 Follow-up from #133

Hello! We are using this GitHub Action with the modification in https://github.com/dorny/paths-filter/pull/133 to avoid reaching the API Rate limit. Using git commands, the action paths filter uses the command `git...

## Bug report ### Expected behavior and actual behavior When using the closure ifEmpty() with an error message in it, the error message is shown together with other errors. These...

### Description of the bug The GitHub Action to announce pipeline releases `.github/workflows/release-announcements.yml` should be removed from non-nfcore pipelines ### Command used and terminal output _No response_ ### System information...

### Description of feature Add the template version to the pipeline `.nf-core.yml` file

Update schema builder to use JSON draft 2020-12

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### Description of feature nf-validation v2.0 uses the latest JSON Schema draft 2020-12 Prior to re-writing the nf-core schema builder, we should update the basis to make it compatible with...