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modify template to use nf-validation plugin

Open mirpedrol opened this issue 3 years ago • 0 comments

Closes #1543

The validation of nextflow_schema.json files from nf-core pipelines is now part of a core Nextflow plugin: https://github.com/nextflow-io/nf-validation/pull/5

Functions can be imported to a pipeline with include { paramsHelp, paramsSummaryMap, paramsSummaryLog } from 'plugin/nf-validation'

Schema validation code from the pipeline template NfcoreSchema.groovy and MainWorkflow.groovy is removed.

PR checklist

  • [ ] This comment contains a description of changes (with reason)
  • [ ] CHANGELOG.md is updated
  • [ ] If you've fixed a bug or added code that should be tested, add tests!
  • [ ] Documentation in docs is updated

mirpedrol avatar Aug 29 '22 08:08 mirpedrol