Michał T. Lorenc

p.s. Debugging inside Docker part [A](https://www.youtube.com/watch?v=D75NBrjRZzs) and [B](https://www.youtube.com/watch?v=KKVYdm7LJe4)

- Miss-assembly detection: [MisSEQuel](http://bioinformatics.oxfordjournals.org/content/31/12/i80.full.pdf+html) - [GMcloser](http://bioinformatics.oxfordjournals.org/content/31/23/3733.full.pdf+html)

same here

same here

Hi, Do I need to run Racon after HASLR or can I go straight to Pilon? Thank you in advance, Michal

please also add plantee to app.py

Can I pass anyhow a number of cores to DALIGNER?

Minimap2 has also `-c` option which stands for `output CIGAR in PAF`. Is your minimap2 workflow (https://github.com/HingeAssembler/HINGE/issues/112#issuecomment-319093706) still valid? If it is still valid after this step `bamtolas overlaps.las lambda_filtered_subreads.fasta

Hi Ilan, I started to do a bioconda [package](https://github.com/bioconda/bioconda-recipes/pull/3556), but I run into problems. Thank you in advance. Best wishes, Michal

By any chance, do you know any alternatives to DBdust?