mammalian-phenotype-ontology
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mgijax
Standard terms for annotating mammalian phenotypic data
From Peter Robinson abnormal somatic nervous system physiology + any functional anomaly of the part of the peripheral nervous system that is responsible for conveying voluntary motor and external sensory...
HPO just finished up a review of abnormal tooth morphology terms based off this article https://onlinelibrary.wiley.com/doi/pdfdirect/10.1002/ajmg.a.61316 HPO ticket https://github.com/obophenotype/human-phenotype-ontology/issues/5510 We should look at what they did and the article to...
both abnormal cone electrophysiology and abnormal rod electrophysiology have many annotations, we should review the annotations and look to see what terms we need to add.
We have a fair number of annotations for response to nerve crush injury, mostly annotated to abnormal response to injury. We should add specific terms for this. See J:268832
Copy what HPO has done: https://github.com/obophenotype/human-phenotype-ontology/issues/new/choose Chris M put together an example of how to do this: https://github.com/ewels/MultiQC/tree/master/.github
The jenkins servers are about to be retired. Lets try to use GitHub actions instead!
we have 128 models of lipid storage disease in the DO but the MP terms don’t really allow for abnormal lipid storage or abnormal lipid trafficking or whatever so I’m...
Consider splitting abnormal platelet dense granule physiology - add terms for abnormal/increased/decreased/absent dense granule secretion See J:231551 and existing annotations
From Monika: What MP term do I use if the authors state that accumulation of lysosomal storage material is seen in certain parts of the brain? (see genotype MGI:3759418). I...
We need to review oxidative stress (MP:0003674) and the annotations to this term. See https://github.com/obophenotype/upheno/issues/721 for discussion of definition of oxidative stress and discussion of if this is a phenotype....