phenotype topic

Ontology for the description of human clinical features

obophenotype

An NLP framework for clinical phenotyping. Docker | Python | Solr | OMOP. http://claritynlp.readthedocs.io/en/latest/

ClarityNLP

Machine-readable version of electronic health record phenotypes for Kuan V. and Denaxas S. et al.

spiros

phenopackets

Python library for extracting HPO encoded phenotypes from text

GeneDx

An Open Platform for Harmonisation & Analysis of Sequencing & Phenotype Data

phenopolis

Explore the Plant Trait Ontology on the Planteome site.

Planteome

Standard terms for annotating mammalian phenotypic data

mgijax

A Python package for pharmacogenomics (PGx) research

sbslee

Modeling and Analysis of (Statistical) Genetics data in python

shz9