phenotype topic
List
phenotype repositories
human-phenotype-ontology
279
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51
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Ontology for the description of human clinical features
ClarityNLP
105
Stars
42
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An NLP framework for clinical phenotyping. Docker | Python | Solr | OMOP. http://claritynlp.readthedocs.io/en/latest/
chronological-map-phenotypes
45
Stars
40
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Machine-readable version of electronic health record phenotypes for Kuan V. and Denaxas S. et al.
txt2hpo
23
Stars
4
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Python library for extracting HPO encoded phenotypes from text
phenopolis
33
Stars
5
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An Open Platform for Harmonisation & Analysis of Sequencing & Phenotype Data
plant-trait-ontology
37
Stars
12
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Explore the Plant Trait Ontology on the Planteome site.
mammalian-phenotype-ontology
19
Stars
6
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Standard terms for annotating mammalian phenotypic data
pypgx
57
Stars
8
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A Python package for pharmacogenomics (PGx) research