A. Murat Eren (Meren)
A. Murat Eren (Meren)
## The need Collection mode serves as a way to display the distribution of each bin across samples (rather than contigs, which is the default mode). As highlighted in #1581...
The program `anvi-self-test` runs various suites that executes a list anvi'o commands on pre-defined mock example data files typically stored in the [sandbox directory](https://github.com/merenlab/anvio/tree/master/anvio/tests/sandbox). One of these mock datasets a...
This should be re-formatted into proper unit tests and moved to the unit tests directory: https://github.com/merenlab/anvio/blob/master/anvio/tests/run_scg_taxonomy_consensus_processing_tests.py
The program `anvi-script-visualize-split-coverages` (see #1171) accepts additional data files for samples to set background colors which has currently two columns, `sample_name` and `sample_color`. If there is a default state in...
We occasionally get stuff like this:  Situations where the samples information has too many layers, the default height of 180 makes things impossible to work with. It is easy...
In addition to artifacts and programs, the anvi'o docs now supports workflows following the PR #1977. Adding a new workflow is quite straightforward, and every file that needs to be...
It has been a long time anvi'o suffered from occasional 'sad tables' when a user run programs such as `anvi-run-hmms` on the same database with multiple models in parallel. Or...
This adds an option to remove short alignments based on number of aligned nucleotides. I've been using this for awhile.
I’m starting this issue to document problems with the revamped anvi’o interactive interface here for @metehaansever's consideration. The changes are in the branch `ui-improvements`. If you are using anvio-dev, please...
So we recently decided to change the collection of SCGs in anvi'o that are used to infer taxonomy of genomes rapidly. The SCG data are coming from the GTDB, and...