Maxime U Garcia

I had tests running quite well for like 1 week (I had one test for two days instead of two), and no more test since and it's been two week....

@nf-core/core any idea on this `66505 Bus error`?

> Are there no other alternatives? I tried other pipelines from nf-core and got no errors on my current HPC. Besides, it's only the `BaseRecalibrator` step which complains, while everything...

> Should I use the option `--save_bam_mapped` to enable this caching? `--save_bam_mapped` should only save bams produced after mapping, so will no enable any cache here.

> Nope, it's not because the singularity's version. Any idea about what's happening? @jgarces02 I have no idea, can you share the `.command.error`, `.command.sh` or any other relevant `.command.*` files...

> There is a doc section about what to expect from the tests, that would also need updating. We actually don't explain too much there, and I think now with...

rich codex should be a separate PR, but I like the idea

Sentieon has that if I remember well

That is some tremendous work. You went way beyond what I had in mind. That's wonderful. I love this so much. Small comments about code cohesion when having contains. I...

Could you update CHANGELOG as well?