Maxime U Garcia
Maxime U Garcia
I'm not sure it's actually working as expected: ```home/runner/pytest_workflow_vfashlpr/Run_default_pipeline/results/multiqc' does not exist while it should```
For the moment, neither snapaligner nor bowtie2 can be used because I haven't add them in our params.aligner
> > For the moment, neither snapaligner nor bowtie2 can be used because I haven't add them in our params.aligner > > Probably late to the party, but have to...
> I can't see any aligner tests in the CI. Am I right? https://github.com/nf-core/sarek/actions/runs/3240467988/jobs/5311130371
I did. Have a look at the linked issues...
I love it, it's amazing, but only issue would be the modules.config. Idea would be to be more granular and split our modules.config.
Shall we close this one, as I'm assuming it's no longer relevant. @Emiller88 @mahesh-panchal
If you haven't done any modification to `/public/home/luzhang/.nextflow/assets/nf-core/atacseq` I'd do a simple `rm -rf /public/home/luzhang/.nextflow/assets/nf-core/atacseq`
what's your command line when running the pipeline?
can you try: ``` nextflow pull nf-core/atacseq -r 1.2.2 ```