Maxime U Garcia
Maxime U Garcia
Salut, j'ai eu une erreur avec un permalien sur mon shaarli Voici le permalien en question : http://shaarli.ithake.eu/?-yk4lg Chose étrange, il commence par un - et donc après quelques recherches...
EDIT (from @cjfields): Modules checklist: - [x] alignment (accelerated bwa) - [ ] ~BQSR (optional?) (EDIT: Won't be implemented. It should be possible to use GATK-based BQSR.)~ - [x] DNAseq...
### Description of the bug we have a `.list`, we should either have a `.bed` or a `.interval_list` ### Command used and terminal output _No response_ ### Relevant files _No...
## PR checklist - [ ] This comment contains a description of changes (with reason). - [ ] If you've fixed a bug or added code that should be tested,...
## PR checklist - [ ] This comment contains a description of changes (with reason). - [ ] If you've fixed a bug or added code that should be tested,...
https://gatkforums.broadinstitute.org/gatk/discussion/11415/run-the-germline-gatk-best-practices-pipeline-for-5-per-genome https://github.com/gatk-workflows/gatk4-genome-processing-pipeline
Issue by @apeltzer, moved from SciLifeLab#687 > **Is your feature request related to a problem? Please describe.** > Not really ;-) > But this happens quite often when people use...
We should have more information on why we're doing that. I do believe it's a good idea, but can we back it up? https://github.com/nf-core/sarek/blob/05c6e0b63251af83b9e7d5b259cec9e679fccf57/main.nf#L673-L681
Issue by @Anuragksingh, moved from SciLifeLab#763 > Hello, > I had some doubts over ascat. > It would be really helpful if you can provide some insights about that. >...
_Originally posted by @jgarces02 in https://github.com/nf-core/sarek/issues/607#issuecomment-1169721779_ > I'm having another error, this time it's different and can be caused by [_singularity_'s version](https://github.com/nf-core/eager/issues/95). I'm going to update it and I'll tell...