Maxime U Garcia

icon indicating a website link https://maxulysse.github.io/ icon indicating an email [email protected]

icon company @seqeralabs icon location Stockholm icon location Bioinfomagician designing pipelines @seqeralabs | @nf-core

Results 468 comments of Maxime U Garcia

WIP: Fix warning nf core lint and nextflow lint

solving conflicts locally, as there's a complex snapshot merge conflict involved

Caused by: java.nio.channels.OverlappingFileLockException

Sounds perfect to me

Caused by: java.nio.channels.OverlappingFileLockException

https://github.com/nf-core/modules/pull/6685

Caused by: java.nio.channels.OverlappingFileLockException

https://github.com/nf-core/modules/pull/6798

Caused by: java.nio.channels.OverlappingFileLockException

I would have kept it open until we push up the minimal NXF version with a tools release

update module: need to create tests for getorganelle/fromreads

there used to be tests: https://github.com/nf-core/modules/pull/4484

Proposal: nf-core-utils

let's merge https://github.com/nf-core/fetchngs/pull/350 before

[DO NOT MERGE] test new ci setup

I approved to test the new CI, I do not actually approve the PR. [DO NOT MERGE]

Lint for incorrect `.mix(XXX.out.versions.first())` subworklow calls

there is a linting test for that, check the warning in subworkflows

Lint for incorrect `.mix(XXX.out.versions.first())` subworklow calls

that's why I started https://github.com/nf-core/sarek/pull/1955