Marius Pachitariu

Ok, I can output that from Kilosort2. How is the tsv file formatted? I tried a few things that gave an error: >phy template-gui params.py 14:43:38 [E] cli:36 An error...

Thanks Cyrille. I think the defaults for channel number should be the ones from the channel map file, because those are the actual, original channels in the data file. If...

Looks like too many spikes. What kind of probe is this? Is the pitch really 400um? Maybe there is a configuration error, does the data look right in the GUI...

What gpu are you using? Do you get the same error in Kilosort 2.5?

Send a screenshot of the data from the GUI please. Both the raw and filtered views. On Mon, 3 May 2021 at 08:03, paul-aparicio ***@***.***> wrote: > Hi, I am...

The GUI allows you to manually set channels off. You can also drop unwanted channels from the channel map file. Where do you run out of memory? To reduce ops.NT,...

Where do you get the out of memory error, at what step of the pipeline? The only step that doesn't scale nicely with recording time is the drift estimation, which...

These are distinct problems, so let's treat them separately. 1) If you have too many batches, out-of-memory problems are due to the creation of an Nbatches by Nbatches matrix on...

Hmm, that's not where I thought the GPU out-of-memory would occur. How many channels do you have and how long the recording? See also the advice I gave to @brendonw1...

Well, neither of them was developed specifically for sorting long recordings. I think people have had more success with big files on Kilosort1, partly because it is less complex so...