MACS
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macs3-project
MACS -- Model-based Analysis of ChIP-Seq
It might be good to point users to various package managers besides pip that have a MACS3 package. E.g., biology/py-macs3 has been committed to the FreeBSD ports collection. It might...
Hi I was wondering if there is a way to retrieve lambda of the estimated Poisson distribution of every peaks? Thank you very much
Hello, I have a question that arose while using your module, and I'd like to briefly summarize and share it. (Current Situation) I intend to perform peak calling using the...
HI, I need to call broad peaks for histone mark. then i used `-broad` `-max-gap` parameters. but i met some questions. **first:** > macs2 callpeak -t A.sorted.bam -n A --nomodel...
**Hi, i want to call broad peaks for histone mark H3K27me3. but i am confused with the infomation about the broad parameters.** (1) In my opinion, i think this four...
Bug:
**Describe the bug** I think I have done the install successfully. when I test: `macs3 -h` It works well. And I tried to use the callpeak funtion : `macs3 callpeak...
Hello When I install `macs2` ``` python -m pip install MACS2 1 09/14/2023 10:14:38 AM Collecting MACS2 Using cached MACS2-2.2.9.1.tar.gz (2.0 MB) Installing build dependencies ... done Getting requirements to...
$ macs2 callpeak -t /public/home/niehu/projects/Lulab20170712/pipeline/E9_5/out/align/rep2/E9_5_2_R1.trim.PE2SE.nodup.tn5.tagAlign.gz -f BED -n "/public/home/niehu/projects/Lulab20170712/pipeline/E9_5/out/peak/macs2/rep2/E9_5_2_R1.trim.PE2SE.nodup.tn5.pf" -g "mm" -p 0.01 --nomodel --shift -75 --extsize 150 -B --SPMR --keep-dup all --call-summits INFO @ Tue, 25 Jul 2017 12:33:24:...
Hi all, When running hmmratac for one of my samples, using --cutoff-analysis-only, I get this message: "ValueError: adjust --means and --stddev options and re-run command." I'm not sure if this...
I have installed macs3 using pip. It is installed in a virtual environment. I tried to run this cmd: macs3 callpeak -f BAMPE -t h2ak119ub_10A_R1.bam -g hs --broad But I...
