Bug: `LINK : fatal error LNK1181: cannot open input file 'm.lib'`

Open danli349 opened this issue 2 years ago • 1 comments
Hello
When I install macs2
python -m pip install MACS2                                                                  1 09/14/2023 10:14:38 AM
Collecting MACS2
  Using cached MACS2-2.2.9.1.tar.gz (2.0 MB)
  Installing build dependencies ... done
  Getting requirements to build wheel ... done
  Preparing metadata (pyproject.toml) ... done
Requirement already satisfied: numpy>=1.19 in c:\users\lidan\miniconda311\lib\site-packages (from MACS2) (1.24.4)
Collecting Cython~=0.29 (from MACS2)
  Using cached Cython-0.29.36-py2.py3-none-any.whl (988 kB)
Building wheels for collected packages: MACS2
  Building wheel for MACS2 (pyproject.toml) ... error
  error: subprocess-exited-with-error

  × Building wheel for MACS2 (pyproject.toml) did not run successfully.
  │ exit code: 1
  ╰─> [42 lines of output]
      running bdist_wheel
      running build
      running build_py
      creating build
      creating build\lib.win-amd64-cpython-311
      creating build\lib.win-amd64-cpython-311\MACS2
      copying MACS2\bdgbroadcall_cmd.py -> build\lib.win-amd64-cpython-311\MACS2
      copying MACS2\bdgcmp_cmd.py -> build\lib.win-amd64-cpython-311\MACS2
      copying MACS2\bdgdiff_cmd.py -> build\lib.win-amd64-cpython-311\MACS2
      copying MACS2\bdgopt_cmd.py -> build\lib.win-amd64-cpython-311\MACS2
      copying MACS2\bdgpeakcall_cmd.py -> build\lib.win-amd64-cpython-311\MACS2
      copying MACS2\callpeak_cmd.py -> build\lib.win-amd64-cpython-311\MACS2
      copying MACS2\cmbreps_cmd.py -> build\lib.win-amd64-cpython-311\MACS2
      copying MACS2\Constants.py -> build\lib.win-amd64-cpython-311\MACS2
      copying MACS2\diffpeak_cmd.py -> build\lib.win-amd64-cpython-311\MACS2
      copying MACS2\filterdup_cmd.py -> build\lib.win-amd64-cpython-311\MACS2
      copying MACS2\OptValidator.py -> build\lib.win-amd64-cpython-311\MACS2
      copying MACS2\OutputWriter.py -> build\lib.win-amd64-cpython-311\MACS2
      copying MACS2\pileup_cmd.py -> build\lib.win-amd64-cpython-311\MACS2
      copying MACS2\predictd_cmd.py -> build\lib.win-amd64-cpython-311\MACS2
      copying MACS2\randsample_cmd.py -> build\lib.win-amd64-cpython-311\MACS2
      copying MACS2\refinepeak_cmd.py -> build\lib.win-amd64-cpython-311\MACS2
      copying MACS2\__init__.py -> build\lib.win-amd64-cpython-311\MACS2
      creating build\lib.win-amd64-cpython-311\MACS2\IO
      copying MACS2\IO\__init__.py -> build\lib.win-amd64-cpython-311\MACS2\IO
      copying MACS2\cPosValCalculation.pxd -> build\lib.win-amd64-cpython-311\MACS2
      copying MACS2\khash.pxd -> build\lib.win-amd64-cpython-311\MACS2
      running build_ext
      building 'MACS2.Prob' extension
      creating build\temp.win-amd64-cpython-311
      creating build\temp.win-amd64-cpython-311\Release
      creating build\temp.win-amd64-cpython-311\Release\MACS2
      "C:\Program Files (x86)\Microsoft Visual Studio\2019\BuildTools\VC\Tools\MSVC\14.29.30133\bin\HostX86\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -IC:\Users\lidan\AppData\Local\Temp\pip-build-env-a10kuf5n\overlay\Lib\site-packages\numpy\core\include -IC:\Users\lidan\miniconda311\include -IC:\Users\lidan\miniconda311\Include "-IC:\Program Files (x86)\Microsoft Visual Studio\2019\BuildTools\VC\Tools\MSVC\14.29.30133\include" "-IC:\Program Files (x86)\Windows Kits\NETFXSDK\4.8\include\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /TcMACS2/Prob.c /Fobuild\temp.win-amd64-cpython-311\Release\MACS2/Prob.obj -w -O3 -ffast-math -g0
      cl : Command line warning D9025 : overriding '/W3' with '/w'
      cl : Command line warning D9002 : ignoring unknown option '-O3'
      cl : Command line warning D9002 : ignoring unknown option '-ffast-math'
      cl : Command line warning D9002 : ignoring unknown option '-g0'
      Prob.c
      C:\Users\lidan\AppData\Local\Temp\pip-build-env-a10kuf5n\overlay\Lib\site-packages\numpy\core\include\numpy\npy_1_7_deprecated_api.h(14) : Warning Msg: Using deprecated NumPy API, disable it with #define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION
      "C:\Program Files (x86)\Microsoft Visual Studio\2019\BuildTools\VC\Tools\MSVC\14.29.30133\bin\HostX86\x64\link.exe" /nologo /INCREMENTAL:NO /LTCG /DLL /MANIFEST:EMBED,ID=2 /MANIFESTUAC:NO /LIBPATH:C:\Users\lidan\miniconda311\libs /LIBPATH:C:\Users\lidan\miniconda311 /LIBPATH:C:\Users\lidan\miniconda311\PCbuild\amd64 "/LIBPATH:C:\Program Files (x86)\Microsoft Visual Studio\2019\BuildTools\VC\Tools\MSVC\14.29.30133\lib\x64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\NETFXSDK\4.8\lib\um\x64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" m.lib /EXPORT:PyInit_Prob build\temp.win-amd64-cpython-311\Release\MACS2/Prob.obj /OUT:build\lib.win-amd64-cpython-311\MACS2\Prob.cp311-win_amd64.pyd /IMPLIB:build\temp.win-amd64-cpython-311\Release\MACS2\Prob.cp311-win_amd64.lib
      LINK : fatal error LNK1181: cannot open input file 'm.lib'
      error: command 'C:\\Program Files (x86)\\Microsoft Visual Studio\\2019\\BuildTools\\VC\\Tools\\MSVC\\14.29.30133\\bin\\HostX86\\x64\\link.exe' failed with exit code 1181
      [end of output]

  note: This error originates from a subprocess, and is likely not a problem with pip.
  ERROR: Failed building wheel for MACS2
Failed to build MACS2
ERROR: Could not build wheels for MACS2, which is required to install pyproject.toml-based projects
Can you please let me know how to fix it? Thanks a lot
Sep 14 '23 14:09 danli349
Hi @danli349, can you provide the following please:
OS: [e.g. Linux, Mac OSX] [note: Windows NOT supported]
Python version [e.g. 3.7.1]
Numpy version [e.g. 1.17.0]
MACS Version [e.g. 2.2.4]
Thanks
Sep 14 '23 15:09 philippadoherty