Luis Pedro Coelho
Luis Pedro Coelho
Sorry for the long delay, but `--ml-threshold 30` seems very unreasonaby low (arguably, we should warn about that or did you mean `--ml-threshold 3000`?). Also, coul you upgrade to `SemiBin2`?
Is `L1_contig_1000@L1` your sample? Is it possible that it has a single contig?
Unfortunately, it's not trivial to use non-sorted files. It's conceptually possible (we do so in [NGLess](https://ngless.embl.de/)), but not in a way that fits semibin
For more general discussion (ie, not bug reports), the mailing list (https://groups.google.com/g/semibin-users) is a better forum, but it could be possible to use the NGLess abundances, yes. The `data_split.csv` file...
This is some weird conda installation issue that I also do not understand. Can you try just running macrel on a new, clean conda environment (i.e., one with nothing but...
No idea how this could be happening for some datasets and not others. It is very mysterious to me
Thanks for the kind words. At the moment, we do not support that, but you are not the first to ask about it and we might just support it in...
Note that, right now (since `v0.7.0`), if you use the `hamronization` framework and then apply argnorm to the results, you get a single output with all the results. I think...
Can you be a bit more specific with examples of what you would like? Thanks
Unfortunately, SemiBin2 is prokaryotic-only at the moment. I would love to be able to extend it to eukaryotes (it's a literally F.A.Q.), but it would require a significant amount of...