Luis Pedro Coelho
Luis Pedro Coelho
We cannot reproduce this, unfortunately My guess is that this is some openMP/BLAS multithreading inside NumPy, which is a bit non-trivial to control, but I'll leave the issue open for...
If you are calling `SemiBin2`, it should not be downloading the MMSeqs DB anymore. I will check again whether we had not mistakenly kept that in.
`SemiBin2` should not be downloading the database anymore and, in our tests, it does not.
@jolespin : is `SemiBin2` downloading the database? With default parameters, it should not
I am going to close this as an issue, but feel free to use the mailing list (https://groups.google.com/g/semibin-users) for more general discussions ...
SemiBin should not have generated an error here (or at least a more informative error), but it found `0` bins in this sample (see the message `Number of bins prior...
Yes, as of now, pretrained models can only be used for single-sample binning. This is because the model depends on the number of samples and we'd have to have a...
Yes, that is a current limitation
Coverage is always used, it is just processed differently.
Thanks for the report. Can you tell us what was the command that you ran?