Lucian Smith

Explosions and keeping don't mix

1

**Describe the bug** If you roll exploding dice and only keep some, the bot keeps the top n in the entire pool of original+exploded, instead of treating original max+explosion as...

Allow pip install to install to a date: install only package versions that were available on or before that day.

23

### What's the problem this feature will solve? It is often the case that python package updates will break old code. This is particularly problematic in science, where computational research...

*Please include a short description of problem here* https://github.com/opencobra/cobratoolbox/blob/37c922c422a19d731da66e81059ec0989db39418/src/base/io/utilities/SBML/getBioQualifiers.m lists several qualifiers in a single list, but some of them come from different lists; see: https://web.archive.org/web/20211204231945/http://co.mbine.org/specifications/qualifiers In particular, 'isDerivedFrom', 'isInstanceOf',...

### Issue Report Checklist * [x ] Searched the [issues page](https://github.com/spyder-ide/spyder/issues?q=is%3Aissue) for similar reports * [x ] Read the relevant sections of the [Spyder Troubleshooting Guide](https://github.com/spyder-ide/spyder/wiki/Troubleshooting-Guide-and-FAQ) and followed its advice...

Update PETab to be model format agnostic

4

**Which problem would you like to address? Please describe.** The CellML team is about to implement support for parameter estimation in OpenCor, and originally investigated PETab as the format to...

Request: allow import of CellML 1.0 and 1.1 models

7

Once libCellML is stable, I would like to use it to replace my old CellML API code in Antimony to allow CellML translation to and from Antimony and SBML. As...

Include os

1

Need 'os' in line 112.

Since omex files are basically just zip files, you can try opening .zip files as .omex

For example: https://run.biosimulations.org/runs/64cbd871040905a8ccdd4619#tab=log

If you click on 'New Issue' from https://github.com/biosimulations/biosimulations/issues , it takes you to https://github.com/biosimulations/biosimulations/issues/new/choose , which lists a bunch of options. none of them are a basic link to https://github.com/biosimulations/biosimulations/issues/new...