Lucian Smith
Lucian Smith
From Ilya: > I've checked tests again (this time for older versions of SBML) and noticed that in tests 1167 and 1168 for SBML l3v1 files "enzyme-identical-l3v1.xml" have external model...
Test 1805 expects results for compartments 'comp', 'Comp', and 'cOmP'. If it gets results in the order 'Comp', 'comp', 'cOmP', it'll mis-compare the data left-to-right, and not match up the...
Tests 1820 and 1821 have parameters 'time', 'Time' and 'TIME' in the SBML, which are requested as output. The canonical output is: ``` Time,time,Time,TIME 0,10,11,12 1,10,11,12 2,10,11,12 [etc.] ``` libroadrunner...
The original version of these files was indeed wrong as per the failure they are supposed to test, but it's slightly more likely that someone might make a mistake putting...
We test for error 99107 in the file 99107-fail-01-06-10102.xml, but the problem it detects is, I believe, not actually an error. The file defines a new namespace 'appear' and adds...
We found a model that didn't work correctly on roadrunner, since there was a piecewise equation that only changed for a window of time that wasn't checked by the CVODE...
It's impossible to create a flux objective and add it to an L3v2 model: * If you run createFluxObjective(), it gives you an object with a getLevel() of 3, a...
Fixes #360 Some objects already didn't check the version, and some didn't check the level, either. This standardizes on just checking the package version. Doesn't fix anything for other packages,...
At least for the online validator, I get this error: Warning[ Line 2](https://synonym.caltech.edu/validator_servlet/section-print-result.jsp#line-2) Column 34: (SBML Validation Rule #10719) The value of the 'sboTerm' attribute on the object is expected...
Because of Reasons, I'm adding modified dates to a model, then replacing it with a new modified date. So inbetween, I call 'unsetModifiedDates'. This mostly works, but I end up...