Lucian Smith

### Contact Details _No response_ ### Location runBiosimulations ### What happened? https://run.biosimulations.org/utils/validate-project tells me that there is no metadata file, when there is one. [BIOMD0000000001.zip](https://github.com/biosimulations/biosimulations/files/11142162/BIOMD0000000001.zip) ### What made it happen?...

### Contact Details _No response_ ### Location runBiosimulations ### What happened? Models that succeed using LSODA sometimes do not succeed using CVODE, due to needing to turn on/off the 'stiff'...

🐛: Run biosimulations fails when there's multiple manifest.xml files in the archive

2

### Contact Details _No response_ ### Location runBiosimulations ### What happened? Everything ran though and looked fine, but it then claimed it failed and quit, because there was no RDF...

### Contact Details _No response_ ### Location runBiosimulations ### What happened? https://run.biosimulations.org/runs/641103b9f408510872c6a79d#tab=viz The chart in question has an X axis with the label "Time" and a Y axis with the...

🐛: A late validation step requires a 'task' attribute for a 'variable' object that doesn't actually require one.

10

### Contact Details _No response_ ### Location runBiosimulations ### What happened? Tried the latest version of a biomodels OMEX file; got this error. Last time it was a SED-ML validation...

### Contact Details _No response_ ### Location runBiosimulations ### What happened? I submitted [test_model_change.omex.zip](https://github.com/biosimulations/biosimulations/files/10886886/test_model_change.omex.zip) trying to create a simpler version of https://github.com/biosimulations/biosimulations/issues/4604 but was thwarted: the file runs fine in...

Better error message needed than "error uploading the SED-ML specifications to the API".

5

### Contact Details [email protected] ### Location runBiosimulations ### What happened? Uploaded an omex file that failed, claiming "error uploading the SED-ML specifications to the API." This... seems pretty weird! Why...

🐛: Can't change a species value by referencing its ID

8

### Contact Details _No response_ ### Location runBiosimulations ### What happened? When running the attached SED-ML file, biosimulations claims there's an error: ``` target /sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='X'] is not a valid XPath...

### Contact Details _No response_ ### Location BioSimulations ### What happened? Runbiosimulations failed a run because it couldn't figure out model changes, but validation didn't find that error beforehand. ###...

🐛: runbiosimulations claims that no simulator can perform generic steady state analysis

14

### Contact Details _No response_ ### Location runBiosimulations ### What happened? I uploaded [Figure5.omex.zip](https://github.com/biosimulations/biosimulations/files/10198550/Figure5.omex.zip) to [runbiosimulations](https://run.biosimulations.org/runs/new) and all of the simulators are greyed out. There are actually plenty of simulators...