Lucian Smith
Lucian Smith
I'm getting crashes at the end of my program when an SBML document is deleted, at the line: SBMLTransforms::clearComponentValues(mModel); at line 240 of SBMLDocument. I think this is because the...
As per https://github.com/sbmlteam/sbml-test-suite/issues/87 it would be nice to have a converter that could reduce the use of speciesReference IDs in the model. This complete when the speciesReference is constant: any...
Moving from https://sourceforge.net/p/sbml/tickets/11/ : "libsbml uses it's own library finding code in cmake. If this were changed to to use the standard built-in cmake find_package(...) routines, it would work out...
cf https://github.com/sbmlteam/sbml-test-suite/issues/85 we should set hasOnlySubstanceUnits to 'true' when translating an L2 species with a 0D compartment to L3.
I have a problem. I'm trying to build libsbml in a project where libsbml's dependencies are also being built at the same time. The problem is that when libsbml tries...
https://github.com/sbmlteam/sbml-org-website/tree/main/site/static/software/libsbml/ contains the actual source of the latest docs. libsbml should add a new 'build docs' target so the docs are built automatically, and then a note added to the...
There are a few options in the comp flattening converter that didn't interact with each other intuitively for me for unimplemented packages, namely: stripUnflattenablePackages (true/false) abortIfUnflattenable (none/requiredOnly/all) I believe there...
When we build the python bindings, we create setup.py and __init__.py files in the build/ directory, and use them to install libsbml. However, the installation of the bindings (install/bindings/python/) doesn't...
Installing xppaut via source download is very temperamental and doesn't always work; the URL often times out. Much simpler to install directly via apt-get.
The temp-biomodels project has a lot of new SED-ML, and much of it is correctly interpreted by VCell, but there are some cases where there are breakdowns. Attached is a...