LinXing Chen
Great. for 1 and 2, could you please compare and let me know if the results are the same, before and after you edited the lines? If it works, I...
oops. can you share me the potential joins file? i can take a look to see which one is correct. Best, LinXing LinXing Chen, Ph.D. Associated Project Scientist, The Banfield...
Let me know when you have time to share the file. :)
Not this file but the `COBRA_potential_joining_paths.txt` file in the folder of `intermediate.files`. You probably need to send me the file of both runs. I will take a look tomorrow if...
It is so weird, they should be the same given that the potential_joining_paths is exactly the same. Could you please send me the debug file (could be huge I guess,...
Hi, I checked the debug files you sent me. From where I could see that the sequences of `M72_2|k141_22888658` and `M72_2|k141_10144865` were validly joined until the last step. For now,...
did you installed the newest version (there are some modifications therein) and thus got another different results?
that's so weird. I am still confused what are your input files of -f/--fasta and -q/--query.
if in your practice, -f/--fasta = "raw assembly result 1", then it is incorrect, -f/--fasta should be all the assembled contigs without length filtering. -q/--query could be contigs of any...
Of course this is NOT COBRA designed to be. I have to run it myself to see what is going on.