LinXing Chen

Unfortunately, I have no idea what is going on. Please try another sample, if you have, to see if this happens again to you.

Hi Andreas, Thank you for your questions. 1) you have to modify headers to match those from the assembled contigs file. 2) the depth should be exactly two columns, the...

Hi, Thank you for your interest in COBRA. I am not sure how you prepared your input file, but please ensure that, (1) you use all the contigs or scaffolds...

Hi Shujie, That's a good question. I do not suggest you using cobra given that the short contigs have been excluded, two reasons, first is cobra relies on these short...

Hi, thank you for your questions. 1. COBRA does not check if a query comes from a megaphage or a non-megaphage. 2. Yes, it is doable. Please let me know...

Please keep in mind all queries (-q) and contigs/scaffolds (-f) should be original from the assembly without cutting or any other modifications.

good question. it is fine. COBRA will generate a new fasta file, which includes all the unique joined sequences and other original sequences that have not been joined, for subsequent...

if your queries are predicted viral contigs/scaffolds, and you want to focus on them for the subsequent analyses, you could directly combine the five fasta files of the five categories.

Hi, I have not tested MetaVirusSPAdes, but please remember that -q and -f contigs/scaffolds should come from the same assembly. I hope this helps.

Hi, thank you for your interest in COBRA and let me know about PenguiN. I had a quick look at the preprint and found that it was specifically developed for...